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DrawMolMCHCircleAndLine.h
Go to the documentation of this file.
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//
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// Copyright (C) 2023 David Cosgrove and other RDKit contributors
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//
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// @@ All Rights Reserved @@
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// This file is part of the RDKit.
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// The contents are covered by the terms of the BSD license
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// which is included in the file license.txt, found at the root
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// of the RDKit source tree.
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//
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// This is the original multi-coloured highlighting code, which is done
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// by multi-coloured arcs and bars.
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#ifndef DRAWMOLMCHCIRCLEANDLINE_H
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#define DRAWMOLMCHCIRCLEANDLINE_H
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#include <
GraphMol/MolDraw2D/DrawMolMCH.h
>
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namespace
RDKit
{
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namespace
MolDraw2D_detail
{
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class
DrawMolMCHCircleAndLine
:
public
DrawMolMCH
{
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public
:
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/*!
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Make a DrawMol that does multi-coloured highlights. Both atoms and
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bonds can have more than 1 highlight. There's no maximum although more
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than 4 is very cluttered.
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\param mol : the molecule to draw
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\param legend : the legend (to be drawn under the molecule)
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\param width : width (in pixels) of the rendering
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set this to -1 to have the canvas size set automatically
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\param height : height (in pixels) of the rendering
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set this to -1 to have the canvas size set automatically
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\param drawOptions : a MolDrawOptions object from the owning MolDraw2D
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\param textDrawer : a DrawText object from the owning MolDraw2D
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\param highlight_atom_map : indexed on atom idx, the colours to be used to
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highlight atoms. Not all atoms need to be mentioned.
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\param highlight_bond_map : indexed on bond idx, the colours to be used to
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highlight bonds. Not all bonds need to be mentioned.
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\param highlightRadii : map from atomId -> radius (in molecule coordinates)
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for the radii of atomic highlights. If not provided for an atom, the default
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value from \c drawOptions() will be used.
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\param highlight_linewidth_multipliers : map from bondId -> int, to change
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the thickness of the lines used for the highlighting.
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\param confId : (optional) conformer ID to be used for atomic
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coordinates
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*/
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DrawMolMCHCircleAndLine
(
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const
ROMol
&mol,
const
std::string &legend,
int
width,
int
height,
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MolDrawOptions
&drawOptions,
DrawText
&textDrawer,
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const
std::map<
int
, std::vector<DrawColour>> &highlight_atom_map,
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const
std::map<
int
, std::vector<DrawColour>> &highlight_bond_map,
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const
std::map<int, double> &highlight_radii,
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const
std::map<int, int> &highlight_linewidth_multipliers,
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int
confId = -1);
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DrawMolMCHCircleAndLine
(
const
DrawMol
&) =
delete
;
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DrawMolMCHCircleAndLine
(
DrawMol
&&) =
delete
;
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DrawMolMCHCircleAndLine
&
operator=
(
const
DrawMol
&) =
delete
;
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DrawMolMCHCircleAndLine
&
operator=
(
DrawMol
&&) =
delete
;
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void
extractHighlights
(
double
scale)
override
;
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void
extractMCHighlights
()
override
;
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void
makeBondHighlights
(
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std::vector<std::unique_ptr<DrawShape>> &bondHighlights);
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void
makeAtomHighlights
(
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std::vector<std::unique_ptr<DrawShape>> &atomHighlights);
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// adjust p2 so that the line from p1 to p2 stops where it intersects
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// the label ellipse for at_idx.
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void
adjustLineEndForHighlight
(
int
at_idx,
Point2D
p1,
Point2D
&p2)
const
;
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void
calcSymbolEllipse
(
unsigned
int
atomIdx,
Point2D
¢re,
double
&xradius,
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double
&yradius)
const
;
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void
fixHighlightJoinProblems
(
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std::vector<std::unique_ptr<DrawShape>> &atomHighlights,
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std::vector<std::unique_ptr<DrawShape>> &bondHighlights);
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};
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}
// namespace MolDraw2D_detail
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}
// namespace RDKit
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#endif
// DRAWMOLMCHCIRCLEANDLINE_H
DrawMolMCH.h
RDGeom::Point2D
Definition
point.h:284
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::extractMCHighlights
void extractMCHighlights() override
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::calcSymbolEllipse
void calcSymbolEllipse(unsigned int atomIdx, Point2D ¢re, double &xradius, double &yradius) const
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::makeAtomHighlights
void makeAtomHighlights(std::vector< std::unique_ptr< DrawShape > > &atomHighlights)
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::DrawMolMCHCircleAndLine
DrawMolMCHCircleAndLine(const ROMol &mol, const std::string &legend, int width, int height, MolDrawOptions &drawOptions, DrawText &textDrawer, const std::map< int, std::vector< DrawColour > > &highlight_atom_map, const std::map< int, std::vector< DrawColour > > &highlight_bond_map, const std::map< int, double > &highlight_radii, const std::map< int, int > &highlight_linewidth_multipliers, int confId=-1)
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::adjustLineEndForHighlight
void adjustLineEndForHighlight(int at_idx, Point2D p1, Point2D &p2) const
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::makeBondHighlights
void makeBondHighlights(std::vector< std::unique_ptr< DrawShape > > &bondHighlights)
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::fixHighlightJoinProblems
void fixHighlightJoinProblems(std::vector< std::unique_ptr< DrawShape > > &atomHighlights, std::vector< std::unique_ptr< DrawShape > > &bondHighlights)
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::operator=
DrawMolMCHCircleAndLine & operator=(DrawMol &&)=delete
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::DrawMolMCHCircleAndLine
DrawMolMCHCircleAndLine(const DrawMol &)=delete
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::operator=
DrawMolMCHCircleAndLine & operator=(const DrawMol &)=delete
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::DrawMolMCHCircleAndLine
DrawMolMCHCircleAndLine(DrawMol &&)=delete
RDKit::MolDraw2D_detail::DrawMolMCHCircleAndLine::extractHighlights
void extractHighlights(double scale) override
RDKit::MolDraw2D_detail::DrawMolMCH::DrawMolMCH
DrawMolMCH(const ROMol &mol, const std::string &legend, int width, int height, MolDrawOptions &drawOptions, DrawText &textDrawer, const std::map< int, std::vector< DrawColour > > &highlight_atom_map, const std::map< int, std::vector< DrawColour > > &highlight_bond_map, const std::map< int, double > &highlight_radii, const std::map< int, int > &highlight_linewidth_multipliers, int confId=-1)
RDKit::MolDraw2D_detail::DrawMol
Definition
DrawMol.h:39
RDKit::MolDraw2D_detail::DrawText
Definition
DrawText.h:46
RDKit::ROMol
Definition
ROMol.h:344
RDKit::MolDraw2D_detail
Definition
AtomSymbol.h:30
RDKit
Std stuff.
Definition
Abbreviations.h:19
RDKit::MolDrawOptions
Definition
MolDraw2DHelpers.h:174
GraphMol
MolDraw2D
DrawMolMCHCircleAndLine.h
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