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RNAlib-2.5.0
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RNAsubopt and density of states declarations. More...
Include dependency graph for subopt.h:
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Data Structures | |
| struct | vrna_subopt_sol_s |
| Solution element from subopt.c. More... | |
Macros | |
| #define | MAXDOS 1000 |
| Maximum density of states discretization for subopt. | |
Typedefs | |
| typedef struct vrna_subopt_sol_s | vrna_subopt_solution_t |
| Typename for the subopt solution list repesenting data structure vrna_subopt_sol_s. | |
| typedef void() | vrna_subopt_callback(const char *stucture, float energy, void *data) |
| Callback for vrna_subopt_cb() More... | |
| typedef struct vrna_subopt_sol_s | SOLUTION |
| Backward compatibility typedef for vrna_subopt_sol_s. More... | |
Functions | |
| vrna_subopt_solution_t * | vrna_subopt (vrna_fold_compound_t *fc, int delta, int sorted, FILE *fp) |
| Returns list of subopt structures or writes to fp. More... | |
| void | vrna_subopt_cb (vrna_fold_compound_t *fc, int delta, vrna_subopt_callback *cb, void *data) |
| Generate suboptimal structures within an energy band arround the MFE. More... | |
| SOLUTION * | subopt (char *seq, char *structure, int delta, FILE *fp) |
| Returns list of subopt structures or writes to fp. More... | |
| SOLUTION * | subopt_par (char *seq, char *structure, vrna_param_t *parameters, int delta, int is_constrained, int is_circular, FILE *fp) |
| Returns list of subopt structures or writes to fp. | |
| SOLUTION * | subopt_circ (char *seq, char *sequence, int delta, FILE *fp) |
| Returns list of circular subopt structures or writes to fp. More... | |
| SOLUTION * | zukersubopt (const char *string) |
| Compute Zuker type suboptimal structures. More... | |
| SOLUTION * | zukersubopt_par (const char *string, vrna_param_t *parameters) |
| Compute Zuker type suboptimal structures. More... | |
Variables | |
| double | print_energy |
| printing threshold for use with logML | |
| int | subopt_sorted |
| Sort output by energy. | |
| int | density_of_states [MAXDOS+1] |
| The Density of States. More... | |
RNAsubopt and density of states declarations.
| typedef struct vrna_subopt_sol_s SOLUTION |
Backward compatibility typedef for vrna_subopt_sol_s.