edu.msu.cme.rdp.multicompare

Class Reprocess

java.lang.Object

edu.msu.cme.rdp.multicompare.Reprocess

public class Reprocess
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
Reprocess()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(java.lang.String[] args) This class reprocesses the classification results (allrank output) and print out hierarchy output file, based on the confidence cutoff; and print out only the detail classification results with assignment at certain rank with confidence above the cutoff or/and matching a given taxon.
static java.util.HashSet<java.lang.String>	readTaxonFilterFile(java.lang.String file)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Reprocess

public Reprocess()

Method Detail

readTaxonFilterFile

public static java.util.HashSet<java.lang.String> readTaxonFilterFile(java.lang.String file)
                                                               throws java.io.IOException

Throws:

java.io.IOException

main

public static void main(java.lang.String[] args)
                 throws java.lang.Exception

This class reprocesses the classification results (allrank output) and print out hierarchy output file, based on the confidence cutoff; and print out only the detail classification results with assignment at certain rank with confidence above the cutoff or/and matching a given taxon.

Parameters:

args -

Throws:

java.lang.Exception