edu.msu.cme.rdp.classifier.train.validation.movingwindow

Class FindWindowFrame

java.lang.Object

edu.msu.cme.rdp.classifier.train.validation.movingwindow.FindWindowFrame

public class FindWindowFrame
extends java.lang.Object

Field Summary

Fields

Modifier and Type	Field and Description
static int	step
static int	window_size

Constructor Summary

Constructors

Constructor and Description
FindWindowFrame()

Method Summary

Methods

Modifier and Type	Method and Description
java.util.ArrayList	find(java.lang.String seqString) Given the aligned E.coli seqstring, find the corresponding model position for each window.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

window_size

public static final int window_size

See Also:

Constant Field Values

step

public static final int step

See Also:

Constant Field Values

Constructor Detail

FindWindowFrame

public FindWindowFrame()

Method Detail

find

public java.util.ArrayList find(java.lang.String seqString)
                         throws java.io.IOException

Given the aligned E.coli seqstring, find the corresponding model position for each window. The model position and the ecoli position starts with 1

Throws:

java.io.IOException