edu.msu.cme.rdp.classifier.train.validation.crossvalidate

Class RdmSelectTaxon

java.lang.Object

edu.msu.cme.rdp.classifier.train.validation.crossvalidate.RdmSelectTaxon

public class RdmSelectTaxon
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
RdmSelectTaxon()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(java.lang.String[] args)
static java.util.Set<java.lang.String>	randomSelectTaxon(java.io.File tax_file, java.io.File source_file, float fraction, java.lang.String rank) Random select taxa at given rank, and return all the sequence IDs assigned to the selected taxa.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

RdmSelectTaxon

public RdmSelectTaxon()

Method Detail

randomSelectTaxon

public static java.util.Set<java.lang.String> randomSelectTaxon(java.io.File tax_file,
                                                java.io.File source_file,
                                                float fraction,
                                                java.lang.String rank)
                                                         throws java.io.IOException

Random select taxa at given rank, and return all the sequence IDs assigned to the selected taxa.

Parameters:

tax_file -

source_file -

fraction -

rank -

Returns:

Throws:

java.io.IOException

main

public static void main(java.lang.String[] args)
                 throws java.lang.Exception

Throws:

java.lang.Exception