edu.msu.cme.rdp.classifier.comparison

Class AbstractNode

java.lang.Object

edu.msu.cme.rdp.classifier.comparison.AbstractNode

All Implemented Interfaces:

ComparisonBrowserNode, Taxon

Direct Known Subclasses:

TaxonTree, UncNode

public abstract class AbstractNode
extends java.lang.Object
implements Taxon, ComparisonBrowserNode

Constructor Summary

Constructors

Constructor and Description
AbstractNode() Creates a new instance of AbstractNode

Method Summary

Methods

Modifier and Type	Method and Description
abstract void	changeConfidence(SigCalculator cal)
abstract ComparisonBrowserNode	findNode(int id)
abstract java.util.Iterator	getDetailIterator(float conf)
double	getDoubleSignificance()
int	getIndent()
java.util.Iterator	getLineageIterator()
abstract java.lang.String	getName()
abstract java.lang.String	getRank()
int	getS1Count()
int	getS2Count()
java.lang.String	getSignificance()
abstract int	getTaxid()
java.util.Iterator	getTaxonIterator(int depth)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractNode

public AbstractNode()

Creates a new instance of AbstractNode

Method Detail

getTaxonIterator

public java.util.Iterator getTaxonIterator(int depth)

Specified by:

getTaxonIterator in interface ComparisonBrowserNode

getLineageIterator

public java.util.Iterator getLineageIterator()

Specified by:

getLineageIterator in interface ComparisonBrowserNode

getDetailIterator

public abstract java.util.Iterator getDetailIterator(float conf)

Specified by:

getDetailIterator in interface ComparisonBrowserNode

changeConfidence

public abstract void changeConfidence(SigCalculator cal)

Specified by:

changeConfidence in interface ComparisonBrowserNode

findNode

public abstract ComparisonBrowserNode findNode(int id)

Specified by:

findNode in interface ComparisonBrowserNode

getName

public abstract java.lang.String getName()

Specified by:

getName in interface Taxon

getRank

public abstract java.lang.String getRank()

Specified by:

getRank in interface Taxon

getTaxid

public abstract int getTaxid()

Specified by:

getTaxid in interface Taxon

getS1Count

public int getS1Count()

Specified by:

getS1Count in interface Taxon

getS2Count

public int getS2Count()

Specified by:

getS2Count in interface Taxon

getDoubleSignificance

public double getDoubleSignificance()

getSignificance

public java.lang.String getSignificance()

Specified by:

getSignificance in interface Taxon

getIndent

public int getIndent()

Specified by:

getIndent in interface Taxon