###
### Thu Jun 30 17:37:46 EDT 2005:
### /usr/pkg/bin/bmake bulk-package for glimmer-2.13
### Current pkg count:  2 installed packages: digest-20050323 genesplicer-20030403
###
BULK> Full rebuild in progress...
BULK> Cleaning package glimmer-2.13 and pre-requisite packages
===> Cleaning for glimmer-2.13
BULK> Removing installed packages which are not needed to build glimmer-2.13
BULK> Keeping BULK_PREREQ: digest-20050323 (pkgtools/digest)
/usr/pkg/sbin/pkg_delete -K /var/db/pkg -r genesplicer-20030403
BULK> Installing packages which are required to build glimmer-2.13.
BULK> Required package digest-20050323 (pkgtools/digest) is already installed
/usr/pkg/bin/bmake package (glimmer-2.13)
===> Checking for vulnerabilities in glimmer-2.13
=> Checksum SHA1 OK for glimmer213.tar.gz.
=> Checksum RMD160 OK for glimmer213.tar.gz.
work -> /pkgobj/biology/glimmer/work
===> Extracting for glimmer-2.13
===> Patching for glimmer-2.13
===> Applying pkgsrc patches for glimmer-2.13
===> Overriding tools for glimmer-2.13
===> Creating toolchain wrappers for glimmer-2.13
===> Configuring for glimmer-2.13
===> Building for glimmer-2.13
CC -O -c adjust.cc -o adjust.o
CC -O -c delcher.cc -o delcher.o
CC -o ./adjust adjust.o delcher.o -lm
CC -O -c anomaly.cc -o anomaly.o
CC -O -c gene.cc -o gene.o
"gene.cc", line 505: Warning: String literal converted to char* in initialization.
1 Warning(s) detected.
CC -o ./anomaly anomaly.o delcher.o gene.o -lm
cc -O -c build-icm.c -o build-icm.o
cc -O -c misc.c -o misc.o
cc -o ./build-icm build-icm.o misc.o -lm
CC -O -c check.cc -o check.o
CC -o ./check check.o delcher.o -lm
CC -O -c codon-usage.cc -o codon-usage.o
CC -o ./codon-usage codon-usage.o delcher.o gene.o -lm
CC -O -c compare-lists.cc -o compare-lists.o
"compare-lists.cc", line 80: Warning (Anachronism): Formal argument 4 of type extern "C" int(*)(const void*,const void*) in call to std::qsort(void*, unsigned, unsigned, extern "C" int(*)(const void*,const void*)) is being passed int(*)(const void*,const void*).
"compare-lists.cc", line 91: Warning (Anachronism): Formal argument 4 of type extern "C" int(*)(const void*,const void*) in call to std::qsort(void*, unsigned, unsigned, extern "C" int(*)(const void*,const void*)) is being passed int(*)(const void*,const void*).
"compare-lists.cc", line 341: Error: Overloading ambiguity between "std::abs(int)" and "std::abs(double)".
1 Error(s) and 2 Warning(s) detected.
*** Error code 1

Stop.
bmake: stopped in /pkgobj/biology/glimmer/work/glimmer2.13
*** Error code 1

Stop.
bmake: stopped in /usr/pkgsrc/biology/glimmer
===> 
===> There was an error during the ``build'' phase.
===> Please investigate the following for more information:
===>      * log of the build
===>      * /pkgobj/biology/glimmer/work/.work.log
===> 
*** Error code 1

Stop.
bmake: stopped in /usr/pkgsrc/biology/glimmer

Please view the work log for glimmer-2.13

BULK> glimmer-2.13 was marked as broken:
-rw-r--r--   1 root     other       3024 Jun 30 17:38 .broken.html
/usr/pkg/bin/bmake deinstall
===> Deinstalling for glimmer
BULK> Marking all packages which depend upon glimmer-2.13 as broken:
BULK> Build for glimmer-2.13 was not successful, aborting.